Glossary

bio-embeddingsHosts the backend to this webserver and all prediction models featured on EMPPAvailable at: 10.1002/cpz1.113

ProtT5Computes protein embeddings used as inputs for downstream prediction tasksAvailable at: 10.1109/TPAMI.2021.3095381

ProtT5ConsPredicts the conservation score for each residue in a sequenceAvailable at: 10.1007/s00439-021-02411-y

ProtT5SecPredicts the secondary structure assignment of each residue in a sequenceAvailable at: 10.1109/TPAMI.2021.3095381

Light Attention (LA)Predicts protein sub-cellular location in ten classesAvailable at: 10.1093/bioadv/vbab035

VESPAiPredicts the effect of varying each residue in a sequence to all other possible amino acidsAvailable at: 10.1007/s00439-021-02411-y

TMbedPredicts signal peptides and transmembrane regionsAvailable at: 10.1101/2022.06.12.495804

GoPredSimPredictions of Gene Ontology (GO) termsAvailable at: 10.1101/2022.06.12.495804

BindEmbedDLPredictions of ligand binding residues in three classesAvailable at: 10.1038/s41598-020-80786-0

ColabFoldPredicts protein 3D structure from an input sequence based on AlphaFoldAvailable at: 10.1038/s41592-022-01488-1

AlphaFold Database (AFDB)A large collection of pre-computed predicted AlphaFold structuresAvailable at: 10.1093/nar/gkab1061